STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0227Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
Rru_A0228
Twin-arginine translocation pathway signal.
       0.773
recO
Recombination protein O, RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.621
Rru_A0229
Glycosyl transferase, group 1.
       0.596
yacG
Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
  
    0.582
Rru_A0371
Double-transmembrane region-like.
  
     0.579
Rru_A0372
Conserved hypothetical protein.
  
     0.579
Rru_A0224
L-lysine 2,3-aminomutase.
 
     0.547
Rru_A3780
LSU ribosomal protein L7AE.
  
     0.535
Rru_A0226
Major facilitator superfamily MFS_1.
       0.508
Rru_A3632
Conserved hypothetical protein.
  
     0.508
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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