STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A03234Fe-4S ferredoxin, iron-sulfur binding. (176 aa)    
Predicted Functional Partners:
Rru_A0316
NADH-ubiquinone oxidoreductase.
 
 
 0.982
Rru_A0324
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.980
Rru_A0313
Aldehyde ferredoxin oxidoreductase.
 
 
 
 0.913
Rru_A0018
Glutamate synthase (NADPH) small subunit.
  
   0.912
Rru_A0321
NADH dehydrogenase (ubiquinone), 20 kDa subunit.
 
 
 0.817
Rru_A0322
Peptidase M52, hydrogen uptake protein.
 
  
 0.767
Rru_A0317
Respiratory-chain NADH dehydrogenase, subunit 1.
  
 
 0.710
Rru_A0320
NADH dehydrogenase (quinone).
  
 
 0.708
Rru_A0319
NADH-ubiquinone oxidoreductase, chain 4L.
 
   
 0.703
Rru_A0312
4Fe-4S ferredoxin, iron-sulfur binding.
 
   
0.695
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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