STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0408Protein of unknown function DUF140. (257 aa)    
Predicted Functional Partners:
Rru_A0407
ABC transporter component.
 0.999
Rru_A2909
ABC transporter component.
 0.993
Rru_A2446
ABC transporter component.
 0.992
Rru_A2438
Mammalian cell entry related.
 
 0.990
Rru_A2439
Mammalian cell entry related.
 
 0.989
Rru_A2910
Mammalian cell entry related.
 
 0.959
Rru_A2445
Protein of unknown function DUF140.
  
  
 
0.923
Rru_A2908
Protein of unknown function DUF140.
  
  
 
0.919
Rru_A1528
Toluene tolerance.
 
 
 0.862
Rru_A0056
Toluene tolerance.
  
 
 0.844
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.