STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0648Conserved hypothetical protein. (212 aa)    
Predicted Functional Partners:
Rru_A0649
Hypothetical protein.
       0.773
Rru_A2744
Conserved hypothetical protein.
 
     0.678
Rru_A3216
Hypothetical protein.
 
     0.645
Rru_A1532
TPR repeat.
  
     0.589
Rru_A2649
Extracellular endo alpha-1 4 polygalactosaminidase or related polysaccharide hydrolase-like.
  
     0.553
tadA
tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.542
Rru_A2939
Hypothetical protein.
 
     0.509
Rru_A3109
Aspartate racemase.
  
  
 0.491
Rru_A3659
Hypothetical protein.
  
     0.491
Rru_A3184
Hypothetical protein.
  
    0.479
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.