Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rru_A0652 | Rru_A0653 | Rru_A0652 | Rru_A0653 | Pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family. | Conserved hypothetical protein. | 0.949 |
| Rru_A0652 | tadA | Rru_A0652 | Rru_A0650 | Pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.620 |
| Rru_A0653 | Rru_A0652 | Rru_A0653 | Rru_A0652 | Conserved hypothetical protein. | Pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family. | 0.949 |
| Rru_A0653 | tadA | Rru_A0653 | Rru_A0650 | Conserved hypothetical protein. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.722 |
| Rru_A2628 | tadA | Rru_A2628 | Rru_A0650 | Cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.730 |
| Rru_A3319 | apt | Rru_A3319 | Rru_A0607 | Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.940 |
| Rru_A3319 | guaA | Rru_A3319 | Rru_A0355 | Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.990 |
| Rru_A3319 | tadA | Rru_A3319 | Rru_A0650 | Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.908 |
| Rru_A3405 | tadA | Rru_A3405 | Rru_A0650 | Formaldehyde dehydrogenase (glutathione); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.635 |
| Rru_A3763 | guaA | Rru_A3763 | Rru_A0355 | Peptidase M22, glycoprotease. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.488 |
| Rru_A3763 | tadA | Rru_A3763 | Rru_A0650 | Peptidase M22, glycoprotease. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.672 |
| Rru_A3763 | tilS | Rru_A3763 | Rru_A1097 | Peptidase M22, glycoprotease. | PP-loop protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.426 |
| apt | Rru_A3319 | Rru_A0607 | Rru_A3319 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine. | 0.940 |
| apt | guaA | Rru_A0607 | Rru_A0355 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.990 |
| apt | tadA | Rru_A0607 | Rru_A0650 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.908 |
| guaA | Rru_A3319 | Rru_A0355 | Rru_A3319 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine. | 0.990 |
| guaA | Rru_A3763 | Rru_A0355 | Rru_A3763 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Peptidase M22, glycoprotease. | 0.488 |
| guaA | apt | Rru_A0355 | Rru_A0607 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.990 |
| guaA | tadA | Rru_A0355 | Rru_A0650 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.644 |
| guaA | tilS | Rru_A0355 | Rru_A1097 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | PP-loop protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.511 |
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