Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rru_A0659 | Rru_A0660 | Rru_A0659 | Rru_A0660 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Periplasmic Sensor Signal Transduction Histidine Kinase. | 0.869 |
| Rru_A0659 | Rru_A0661 | Rru_A0659 | Rru_A0661 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Hly-III related proteins. | 0.462 |
| Rru_A0659 | infA | Rru_A0659 | Rru_A0662 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.447 |
| Rru_A0660 | Rru_A0659 | Rru_A0660 | Rru_A0659 | Periplasmic Sensor Signal Transduction Histidine Kinase. | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.869 |
| Rru_A0660 | Rru_A0661 | Rru_A0660 | Rru_A0661 | Periplasmic Sensor Signal Transduction Histidine Kinase. | Hly-III related proteins. | 0.461 |
| Rru_A0660 | infA | Rru_A0660 | Rru_A0662 | Periplasmic Sensor Signal Transduction Histidine Kinase. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.447 |
| Rru_A0661 | Rru_A0659 | Rru_A0661 | Rru_A0659 | Hly-III related proteins. | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.462 |
| Rru_A0661 | Rru_A0660 | Rru_A0661 | Rru_A0660 | Hly-III related proteins. | Periplasmic Sensor Signal Transduction Histidine Kinase. | 0.461 |
| Rru_A0661 | infA | Rru_A0661 | Rru_A0662 | Hly-III related proteins. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.746 |
| Rru_A0661 | polA | Rru_A0661 | Rru_A3514 | Hly-III related proteins. | DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.598 |
| infA | Rru_A0659 | Rru_A0662 | Rru_A0659 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.447 |
| infA | Rru_A0660 | Rru_A0662 | Rru_A0660 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Periplasmic Sensor Signal Transduction Histidine Kinase. | 0.447 |
| infA | Rru_A0661 | Rru_A0662 | Rru_A0661 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Hly-III related proteins. | 0.746 |
| infA | polA | Rru_A0662 | Rru_A3514 | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.590 |
| polA | Rru_A0661 | Rru_A3514 | Rru_A0661 | DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Hly-III related proteins. | 0.598 |
| polA | infA | Rru_A3514 | Rru_A0662 | DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.590 |