def protein (Rhodospirillum rubrum) - STRING interaction network

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def

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (169 aa)

Predicted Functional Partners:

rpsU

0.925

rplT

0.911

rpsP

0.875

rplX

0.874

rplU

0.871

tig

0.861

rpsT

0.857

rpsO

0.853

rplI

0.849

rplK

0.845

Your Current Organism:

Rhodospirillum rubrum

NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def	rplI	Rru_A1044	Rru_A0411	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.849
def	rplK	Rru_A1044	Rru_A2699	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.845
def	rplT	Rru_A1044	Rru_A3522	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.911
def	rplU	Rru_A1044	Rru_A1242	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.871
def	rplX	Rru_A1044	Rru_A2677	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.874
def	rpsO	Rru_A1044	Rru_A3784	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.853
def	rpsP	Rru_A1044	Rru_A1185	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.875
def	rpsT	Rru_A1044	Rru_A3802	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.857
def	rpsU	Rru_A1044	Rru_A1043	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.925
def	tig	Rru_A1044	Rru_A1549	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.861
rplI	def	Rru_A0411	Rru_A1044	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.849
rplI	rplK	Rru_A0411	Rru_A2699	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.996
rplI	rplT	Rru_A0411	Rru_A3522	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplI	rplU	Rru_A0411	Rru_A1242	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplI	rplX	Rru_A0411	Rru_A2677	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.991
rplI	rpsO	Rru_A0411	Rru_A3784	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.990
rplI	rpsP	Rru_A0411	Rru_A1185	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplI	rpsT	Rru_A0411	Rru_A3802	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.969
rplI	rpsU	Rru_A0411	Rru_A1043	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.973
rplI	tig	Rru_A0411	Rru_A1549	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.957

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