STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1063Putative transcription regulator protein. (114 aa)    
Predicted Functional Partners:
Rru_A1061
Helix-turn-helix protein, CopG.
       0.648
vapC-2
PilT protein-like; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.648
Rru_A0019
Glutamate synthase (NADPH) large subunit.
  
  
 0.489
Rru_A1059
Aldo/keto reductase.
 
     0.472
Rru_A1060
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    
0.460
Rru_A1064
Plasmid maintenance system killer.
       0.458
Rru_A0461
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.456
Rru_A1065
Plasmid maintenance system antidote protein.
       0.447
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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