Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A0336 | Rru_A1103 | Conserved hypothetical protein. | Phenazine biosynthesis PhzC/PhzF protein. | 0.404 |
Rru_A1101 | Rru_A1102 | Hypothetical protein. | Phosphomethylpyrimidine kinase. | 0.455 |
Rru_A1101 | Rru_A1103 | Hypothetical protein. | Phenazine biosynthesis PhzC/PhzF protein. | 0.455 |
Rru_A1102 | Rru_A1101 | Phosphomethylpyrimidine kinase. | Hypothetical protein. | 0.455 |
Rru_A1102 | Rru_A1103 | Phosphomethylpyrimidine kinase. | Phenazine biosynthesis PhzC/PhzF protein. | 0.809 |
Rru_A1102 | Rru_A1104 | Phosphomethylpyrimidine kinase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.592 |
Rru_A1102 | Rru_A3546 | Phosphomethylpyrimidine kinase. | Anthranilate synthase, component II. | 0.426 |
Rru_A1103 | Rru_A0336 | Phenazine biosynthesis PhzC/PhzF protein. | Conserved hypothetical protein. | 0.404 |
Rru_A1103 | Rru_A1101 | Phenazine biosynthesis PhzC/PhzF protein. | Hypothetical protein. | 0.455 |
Rru_A1103 | Rru_A1102 | Phenazine biosynthesis PhzC/PhzF protein. | Phosphomethylpyrimidine kinase. | 0.809 |
Rru_A1103 | Rru_A1104 | Phenazine biosynthesis PhzC/PhzF protein. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.492 |
Rru_A1103 | Rru_A3546 | Phenazine biosynthesis PhzC/PhzF protein. | Anthranilate synthase, component II. | 0.694 |
Rru_A1104 | Rru_A1102 | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | Phosphomethylpyrimidine kinase. | 0.592 |
Rru_A1104 | Rru_A1103 | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | Phenazine biosynthesis PhzC/PhzF protein. | 0.492 |
Rru_A1104 | Rru_A3546 | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | Anthranilate synthase, component II. | 0.507 |
Rru_A3546 | Rru_A1102 | Anthranilate synthase, component II. | Phosphomethylpyrimidine kinase. | 0.426 |
Rru_A3546 | Rru_A1103 | Anthranilate synthase, component II. | Phenazine biosynthesis PhzC/PhzF protein. | 0.694 |
Rru_A3546 | Rru_A1104 | Anthranilate synthase, component II. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.507 |