STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1167Putative hydrogenase expression/formation protein HupK. (406 aa)    
Predicted Functional Partners:
Rru_A1161
Ni-Fe hydrogenase, small subunit.
 
 
 0.997
Rru_A1163
Nickel-dependent hydrogenase b-type cytochrome subunit.
 
 
 0.996
hypA-2
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.974
Rru_A1166
Hydrogenase expression/formation protein hupH.
 
  
 0.973
Rru_A1164
HyaD peptidase. Aspartic peptidase. MEROPS family A31.
 
 
 0.960
Rru_A1165
Hydrogenase expression/formation protein (HUPF/HYPC).
 
 
 0.951
Rru_A1162
Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
     0.912
Rru_A1169
Hydrogenase accessory protein HypB.
 
  
 0.896
nifJ
Pyruvate-ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase.
  
  
 0.884
Rru_A0937
Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
  
 
 0.868
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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