STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1175CsbD-like; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
Rru_A1501
Transport-associated.
 
  
 0.906
Rru_A0119
Protein of unknown function DUF1328.
 
  
 0.889
Rru_A1352
Conserved hypothetical protein.
   
    0.806
Rru_A3380
Conserved hypothetical protein.
  
    0.799
Rru_A3691
Transport-associated.
  
  
 0.733
Rru_A2522
Conserved hypothetical protein PA0741.
  
    0.625
Rru_A0476
OsmC-like protein.
  
  
 0.572
Rru_A0580
OsmC-like protein.
  
  
 0.572
Rru_A3018
Hypothetical protein.
   
  
 0.557
Rru_A3019
Hypothetical protein.
   
  
 0.557
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.