STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1201MaoC-like dehydratase. (353 aa)    
Predicted Functional Partners:
Rru_A3064
Isovaleryl-CoA dehydrogenase.
 
 0.991
Rru_A0217
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.989
Rru_A1200
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.963
Rru_A3062
methylmalonyl-CoA mutase.
 
  
 0.898
Rru_A3063
Crotonyl-CoA reductase.
 
 
 0.882
Rru_A1356
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.620
Rru_A2489
Catalase.
   
 0.620
Rru_A1309
3-hydroxyacyl-CoA dehydrogenase.
  
 0.587
Rru_A1943
Propionyl-CoA carboxylase.
  
  
 0.585
Rru_A1199
Pyridoxal kinase; Belongs to the pyridoxine kinase family.
       0.542
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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