STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1297Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (227 aa)    
Predicted Functional Partners:
Rru_A1295
Extracellular solute-binding protein, family 3.
 
 0.992
Rru_A1298
ABC transporter component.
 
 0.987
Rru_A1296
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
  
 
0.981
Rru_A2251
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.967
Rru_A2090
ABC transporter component.
 
 0.948
Rru_A1001
ABC transporter component.
 
 0.944
Rru_A2250
ABC transporter component.
    0.842
Rru_A1299
FAD linked oxidase-like.
       0.709
Rru_A0781
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
 
0.678
Rru_A2089
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
 
0.673
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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