Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A1277 | Rru_A1336 | Hpt sensor hybrid histidine kinase. | Periplasmic binding protein/LacI transcriptional regulator. | 0.873 |
Rru_A1277 | Rru_A1500 | Hpt sensor hybrid histidine kinase. | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.994 |
Rru_A1277 | Rru_A2108 | Hpt sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.985 |
Rru_A1277 | Rru_A2361 | Hpt sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.995 |
Rru_A1335 | Rru_A1336 | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | Periplasmic binding protein/LacI transcriptional regulator. | 0.961 |
Rru_A1335 | Rru_A1337 | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter component. | 0.937 |
Rru_A1335 | Rru_A1338 | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.612 |
Rru_A1335 | Rru_A2300 | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.413 |
Rru_A1335 | Rru_A2301 | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter component. | 0.910 |
Rru_A1336 | Rru_A1277 | Periplasmic binding protein/LacI transcriptional regulator. | Hpt sensor hybrid histidine kinase. | 0.873 |
Rru_A1336 | Rru_A1335 | Periplasmic binding protein/LacI transcriptional regulator. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.961 |
Rru_A1336 | Rru_A1337 | Periplasmic binding protein/LacI transcriptional regulator. | ABC transporter component. | 0.941 |
Rru_A1336 | Rru_A1338 | Periplasmic binding protein/LacI transcriptional regulator. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.949 |
Rru_A1336 | Rru_A1500 | Periplasmic binding protein/LacI transcriptional regulator. | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.904 |
Rru_A1336 | Rru_A2108 | Periplasmic binding protein/LacI transcriptional regulator. | Hpt sensor hybrid histidine kinase. | 0.873 |
Rru_A1336 | Rru_A2299 | Periplasmic binding protein/LacI transcriptional regulator. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.911 |
Rru_A1336 | Rru_A2300 | Periplasmic binding protein/LacI transcriptional regulator. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.909 |
Rru_A1336 | Rru_A2301 | Periplasmic binding protein/LacI transcriptional regulator. | ABC transporter component. | 0.878 |
Rru_A1336 | Rru_A2361 | Periplasmic binding protein/LacI transcriptional regulator. | Multi-sensor hybrid histidine kinase. | 0.909 |
Rru_A1337 | Rru_A1335 | ABC transporter component. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.937 |
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