STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1360Dak phosphatase. (215 aa)    
Predicted Functional Partners:
Rru_A1340
Glycerone kinase.
 0.999
Rru_A1361
Glycerone kinase.
 0.999
Rru_A1341
Dak phosphatase.
  
  
 
0.920
Rru_A1508
FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.828
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.814
Rru_A1359
Ribose-5-phosphate isomerase.
 
  
 0.753
Rru_A0932
Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains.
   
 
 0.704
Rru_A1362
Xylose isomerase-like TIM barrel.
     
 0.660
TpiA
Triosephosphate isomerase.
  
  
 0.570
Rru_A1972
Phosphoenolpyruvate--protein phosphotransferase.
  
  
 0.567
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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