Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rru_A0010 | Rru_A0019 | Rru_A0010 | Rru_A0019 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Glutamate synthase (NADPH) large subunit. | 0.657 |
| Rru_A0010 | Rru_A1119 | Rru_A0010 | Rru_A1119 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | NnrS. | 0.659 |
| Rru_A0010 | Rru_A1435 | Rru_A0010 | Rru_A1435 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two component, sigma54 specific, transcriptional regulator, Fis family. | 0.771 |
| Rru_A0010 | Rru_A1972 | Rru_A0010 | Rru_A1972 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Phosphoenolpyruvate--protein phosphotransferase. | 0.627 |
| Rru_A0010 | dctA | Rru_A0010 | Rru_A1437 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.601 |
| Rru_A0019 | Rru_A0010 | Rru_A0019 | Rru_A0010 | Glutamate synthase (NADPH) large subunit. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.657 |
| Rru_A0019 | Rru_A1030 | Rru_A0019 | Rru_A1030 | Glutamate synthase (NADPH) large subunit. | Amino acid permease-associated region. | 0.472 |
| Rru_A0019 | Rru_A1972 | Rru_A0019 | Rru_A1972 | Glutamate synthase (NADPH) large subunit. | Phosphoenolpyruvate--protein phosphotransferase. | 0.440 |
| Rru_A0019 | Rru_A2034 | Rru_A0019 | Rru_A2034 | Glutamate synthase (NADPH) large subunit. | Phosphate transporter. | 0.580 |
| Rru_A0019 | dctA | Rru_A0019 | Rru_A1437 | Glutamate synthase (NADPH) large subunit. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.544 |
| Rru_A1030 | Rru_A0019 | Rru_A1030 | Rru_A0019 | Amino acid permease-associated region. | Glutamate synthase (NADPH) large subunit. | 0.472 |
| Rru_A1030 | Rru_A1972 | Rru_A1030 | Rru_A1972 | Amino acid permease-associated region. | Phosphoenolpyruvate--protein phosphotransferase. | 0.487 |
| Rru_A1030 | dctA | Rru_A1030 | Rru_A1437 | Amino acid permease-associated region. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.564 |
| Rru_A1119 | Rru_A0010 | Rru_A1119 | Rru_A0010 | NnrS. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.659 |
| Rru_A1119 | dctA | Rru_A1119 | Rru_A1437 | NnrS. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.562 |
| Rru_A1203 | dctA | Rru_A1203 | Rru_A1437 | Succinate dehydrogenase subunit D. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.731 |
| Rru_A1435 | Rru_A0010 | Rru_A1435 | Rru_A0010 | Two component, sigma54 specific, transcriptional regulator, Fis family. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.771 |
| Rru_A1435 | Rru_A1436 | Rru_A1435 | Rru_A1436 | Two component, sigma54 specific, transcriptional regulator, Fis family. | Histidine kinase. | 0.996 |
| Rru_A1435 | Rru_A2842 | Rru_A1435 | Rru_A2842 | Two component, sigma54 specific, transcriptional regulator, Fis family. | Conserved hypothetical protein; Belongs to the flagella basal body rod proteins family. | 0.421 |
| Rru_A1435 | dctA | Rru_A1435 | Rru_A1437 | Two component, sigma54 specific, transcriptional regulator, Fis family. | Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.544 |
page 1 of 3