STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1541Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)    
Predicted Functional Partners:
Rru_A1542
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.981
Rru_A2071
Methylmalonate-semialdehyde dehydrogenase (acylating).
  
 0.925
Rru_A0191
Aspartate 1-decarboxylase-like.
    
 0.916
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.915
Rru_A0285
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.906
Rru_A1833
3-hydroxyisobutyrate dehydrogenase.
     
 0.903
Rru_A1540
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.859
Rru_A2997
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.813
Rru_A0052
Biotin carboxylase.
   
 
 0.812
Rru_A0914
Aldehyde dehydrogenase.
    
 0.812
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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