STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1944DSBA oxidoreductase. (200 aa)    
Predicted Functional Partners:
Rru_A1942
methylglutaconyl-CoA hydratase.
     
 0.775
Rru_A1941
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
     
 0.766
Rru_A1940
hydroxymethylglutaryl-CoA lyase.
     
 0.760
Rru_A1945
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.736
Rru_A1943
Propionyl-CoA carboxylase.
     
 0.715
Rru_A1947
Nucleotidyltransferase-like.
 
   
 0.699
Rru_A1948
isovaleryl-CoA dehydrogenase.
     
 0.601
Rru_A1978
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
  
   
 0.546
Rru_A1977
Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
   
 0.544
Rru_A1382
butyryl-CoA:acetate CoA transferase.
      
 0.523
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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