STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1954Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (300 aa)    
Predicted Functional Partners:
Rru_A1952
Fusaric acid resistance protein conserved region.
  
 0.989
Rru_A1953
Conserved hypothetical membrane protein.
       0.795
macB
Conserved hypothetical protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.740
Rru_A1951
Transcriptional regulator, AraC family.
 
    0.678
Rru_A1798
Type I secretion outer membrane protein, TolC.
 
 
 0.661
Rru_A2052
RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.624
Rru_A0157
Drug resistance transporter EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
 
 
 0.622
Rru_A0860
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.574
Rru_A2926
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.574
Rru_A3237
RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.574
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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