STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1956Haloacid dehalogenase-like hydrolase. (228 aa)    
Predicted Functional Partners:
Rru_A2658
Haloacid dehalogenase-like hydrolase.
  
  
  0.916
cbbZ
2-phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
  
  
  0.913
rlp
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Catalyzes the conversion of 5-methylthio-D-ribulose 1- phosphate (MTRu-1P) to a 3:1 mixture of 1-methylthioxylulose 5- phosphate (MTXu-5P) and 1-methylthioribulose 5-phosphate (MTRu-5P). Involved in the MTA-isoprenoid shunt of the methionine salvage pathway. Belongs to the RuBisCO large chain family. Type IV subfamily.
    
 0.911
cbbM
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
    
 0.911
Rru_A2002
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
    
 0.908
Rru_A3790
Glycolate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.902
Rru_A1683
HAD-superfamily hydrolase, subfamily IA, variant 1.
     
  0.900
Rru_A1955
Phosphoribosyltransferase.
  
    0.776
Rru_A1958
GMP reductase.
  
    0.665
queC
ExsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.658
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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