STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1968Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain. (142 aa)    
Predicted Functional Partners:
Rru_A1969
Esterase, PHB depolymerase.
 
     0.900
Rru_A1967
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.592
Rru_A0699
Plasmid stabilization system.
  
 
 0.499
Rru_A2376
Hypothetical protein.
  
 
 0.499
Rru_A3239
Plasmid stabilization system.
  
 
 0.499
Rru_A1966
Coenzyme F390 synthetase-like.
       0.494
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
    0.447
Rru_A0976
Transcriptional modulator of MazE/toxin, MazF.
   
 
 0.434
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.