STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Catalyzes the conversion of 5-methylthio-D-ribulose 1- phosphate (MTRu-1P) to a 3:1 mixture of 1-methylthioxylulose 5- phosphate (MTXu-5P) and 1-methylthioribulose 5-phosphate (MTRu-5P). Involved in the MTA-isoprenoid shunt of the methionine salvage pathway. Belongs to the RuBisCO large chain family. Type IV subfamily. (374 aa)    
Predicted Functional Partners:
cupin
Conserved hypothetical protein; Catalyzes the formation of methanethiol and 1-deoxy-D- xylulose 5-phosphate (DXP) from 1-methylthioxylulose 5-phosphate (MTXu- 5P). Involved in the MTA-isoprenoid shunt of the methionine salvage pathway.
 
   
 0.964
Rru_A2404
Phosphoribulokinase.
 
 
 0.945
cbbM
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
  
  
0.935
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.912
Rru_A1956
Haloacid dehalogenase-like hydrolase.
    
 0.911
cbbZ
2-phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.911
Rru_A1683
HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.906
Rru_A2658
Haloacid dehalogenase-like hydrolase.
    
 0.906
mtnA
Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Can also use deoxyribose-1-phosphate in vitro.
 
  
 0.843
Rru_A0774
O-acetylhomoserine/O-acetylserine sulfhydrylase.
   
  
 0.764
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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