STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2006L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (407 aa)    
Predicted Functional Partners:
Rru_A2005
Glutaryl-CoA dehydrogenase.
 
 0.893
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.798
Rru_A1200
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.744
Rru_A0217
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.523
Rru_A2004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.517
Rru_A3109
Aspartate racemase.
     
 0.425
Rru_A1309
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.406
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.