Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rru_A2011ABC transporter component; Belongs to the ABC transporter superfamily. (560 aa)    
Predicted Functional Partners:
Rru_A2012
Binding-protein-dependent transport systems inner membrane component.
 
 0.997
Rru_A0981
Binding-protein-dependent transport systems inner membrane component.
 
 0.970
Rru_A0801
Binding-protein-dependent transport systems inner membrane component.
 
 0.969
Rru_A1919
Binding-protein-dependent transport systems inner membrane component.
 
 0.966
Rru_A2013
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.966
NikC
Binding-protein-dependent transport systems inner membrane component.
 
 0.965
Rru_A2358
Binding-protein-dependent transport systems inner membrane component.
 
 0.964
Rru_A0590
Binding-protein-dependent transport systems inner membrane component.
 
 0.963
Rru_A2177
Binding-protein-dependent transport systems inner membrane component.
 
 0.924
Rru_A0980
Binding-protein-dependent transport systems inner membrane component.
 
 0.864
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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