Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rru_A2012Binding-protein-dependent transport systems inner membrane component. (276 aa)    
Predicted Functional Partners:
Rru_A2011
ABC transporter component; Belongs to the ABC transporter superfamily.
 
 0.997
Rru_A2175
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 0.987
Rru_A0589
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 0.986
Rru_A0802
ABC transporter component.
 
 0.986
Rru_A0982
ABC transporter component; Belongs to the ABC transporter superfamily.
 
 0.986
Rru_A2174
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 0.986
DppF
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 0.986
Rru_A1920
ABC transporter component.
 
 0.985
Rru_A2014
Twin-arginine translocation pathway signal.
 
 0.985
Rru_A2359
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 0.984
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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