STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ubiXPhenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (203 aa)    
Predicted Functional Partners:
Rru_A0574
3-octaprenyl-4hydroxybenzoate decarboxylase; Belongs to the UbiD family.
 
 0.993
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
  
 0.982
Rru_A1419
Carboxylyase-related protein; Belongs to the UbiD family.
  
 0.932
Rru_A0134
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.662
Rru_A0298
Aldehyde dehydrogenase (acceptor).
     
 0.658
Rru_A0462
Aldehyde dehydrogenase.
     
 0.658
Rru_A0914
Aldehyde dehydrogenase.
     
 0.658
ubiL
Ubiquinone hydroxylase UbiL; Catalyzes the hydroxylation of two positions of the aromatic ring during ubiquinone biosynthesis; Belongs to the UbiH/COQ6 family.
     
 0.597
Rru_A0931
Aldehyde dehydrogenase (NAD+).
     
 0.573
Rru_A0285
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.572
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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