STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2113Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (468 aa)    
Predicted Functional Partners:
Rru_A0956
Peptidoglycan glycosyltransferase.
 
 
 0.700
Rru_A0473
Peptidoglycan glycosyltransferase.
 
 
 0.668
Rru_A2147
Penicillin-binding protein 1A.
  
  
 0.627
Rru_A2112
Hypothetical protein.
       0.588
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
 
 0.577
Rru_A2520
Penicillin-binding protein 1A.
  
 
 0.557
Rru_A3393
Penicillin-binding protein 1A.
  
 
 0.557
Rru_A0105
Penicillin-binding protein 1C.
     
 0.520
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.514
Rru_A1195
Cell wall hydrolase, SleB.
  
    0.500
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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