STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2178Extracellular solute-binding protein, family 5. (561 aa)    
Predicted Functional Partners:
Rru_A2176
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.967
Rru_A2177
Binding-protein-dependent transport systems inner membrane component.
 
 0.966
Rru_A2174
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
 
 0.917
Rru_A2175
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
  
 0.914
nifJ
Pyruvate-ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase.
  
    0.755
Rru_A0590
Binding-protein-dependent transport systems inner membrane component.
 
 0.624
Rru_A2173
Leucyl aminopeptidase; Belongs to the peptidase M17 family.
     
 0.622
Rru_A0591
Binding-protein-dependent transport systems inner membrane component.
 
 0.601
Rru_A2358
Binding-protein-dependent transport systems inner membrane component.
 
 0.601
Rru_A0588
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
 
  
 0.562
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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