STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2308Transcriptional regulator, ArsR family. (110 aa)    
Predicted Functional Partners:
Rru_A2309
NADH peroxidase.
  
  
 0.653
Rru_A2985
Hydroxyneurosporene synthase.
      
 0.570
nifJ
Pyruvate-ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase.
     
 0.569
Rru_A2307
Twin-arginine translocation pathway signal.
     
 0.530
Rru_A0555
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
      
 0.487
Rru_A1130
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
      
 0.487
Rru_A2306
Conserved hypothetical protein.
       0.468
Rru_A2310
Cytochrome c family protein.
       0.416
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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