STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2401Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (315 aa)    
Predicted Functional Partners:
Rru_A2404
Phosphoribulokinase.
 
   
 0.837
cbbM
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
 
   
 0.744
fbp
D-fructose 1,6-bisphosphatase.
 
   
 0.622
Rru_A2402
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.575
Rru_A0461
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.517
Rru_A3476
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.502
Rru_A0019
Glutamate synthase (NADPH) large subunit.
  
  
 0.489
Rru_A1540
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.479
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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