STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2423Aminotransferase. (395 aa)    
Predicted Functional Partners:
Rru_A2424
Gamma-glutamyltranspeptidase.
 
   
 0.805
Rru_A2425
Peptidase M48.
       0.596
Rru_A0019
Glutamate synthase (NADPH) large subunit.
  
  
 0.586
nifJ
Pyruvate-ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase.
  
  
 0.578
Rru_A1693
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.545
Rru_A1713
NAD(P)H dehydrogenase (quinone).
   
    0.499
Rru_A3066
NAD(P)H dehydrogenase (quinone).
   
    0.499
Rru_A3542
Malate dehydrogenase; Oxaloacetate decarboxylating (NADP+), phosphate acetyltransferase.
  
 
 0.485
Rru_A1600
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.428
Rru_A2319
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 
 0.428
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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