STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2425Peptidase M48. (457 aa)    
Predicted Functional Partners:
Rru_A2424
Gamma-glutamyltranspeptidase.
       0.681
Rru_A2428
DSBA oxidoreductase.
 
    0.675
Rru_A0714
Protein of unknown function DUF1476.
  
     0.674
Rru_A2426
LrgA.
       0.655
Rru_A2427
LrgB-like protein.
       0.655
Rru_A2423
Aminotransferase.
       0.596
Rru_A1798
Type I secretion outer membrane protein, TolC.
  
    0.551
Rru_A3691
Transport-associated.
  
    0.498
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.488
Rru_A3607
Murein degrading transglycosylase protein.
  
    0.482
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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