Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rru_A1102 | Rru_A2025 | Rru_A1102 | Rru_A2025 | Phosphomethylpyrimidine kinase. | Transcriptional activator, TenA family. | 0.999 |
| Rru_A1102 | Rru_A3633 | Rru_A1102 | Rru_A3633 | Phosphomethylpyrimidine kinase. | Thiamine monophosphate synthase. | 0.801 |
| Rru_A1102 | Rru_A3793 | Rru_A1102 | Rru_A3793 | Phosphomethylpyrimidine kinase. | Molybdopterin biosynthesis protein. | 0.843 |
| Rru_A1102 | thiC | Rru_A1102 | Rru_A2008 | Phosphomethylpyrimidine kinase. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.996 |
| Rru_A1102 | thiE | Rru_A1102 | Rru_A1080 | Phosphomethylpyrimidine kinase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
| Rru_A1102 | thiG | Rru_A1102 | Rru_A2432 | Phosphomethylpyrimidine kinase. | ThiS, thiamine-biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.998 |
| Rru_A1546 | thiG | Rru_A1546 | Rru_A2432 | FAD dependent oxidoreductase. | ThiS, thiamine-biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.941 |
| Rru_A2025 | Rru_A1102 | Rru_A2025 | Rru_A1102 | Transcriptional activator, TenA family. | Phosphomethylpyrimidine kinase. | 0.999 |
| Rru_A2025 | Rru_A3633 | Rru_A2025 | Rru_A3633 | Transcriptional activator, TenA family. | Thiamine monophosphate synthase. | 0.523 |
| Rru_A2025 | Rru_A3793 | Rru_A2025 | Rru_A3793 | Transcriptional activator, TenA family. | Molybdopterin biosynthesis protein. | 0.661 |
| Rru_A2025 | thiC | Rru_A2025 | Rru_A2008 | Transcriptional activator, TenA family. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.622 |
| Rru_A2025 | thiE | Rru_A2025 | Rru_A1080 | Transcriptional activator, TenA family. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.782 |
| Rru_A2025 | thiG | Rru_A2025 | Rru_A2432 | Transcriptional activator, TenA family. | ThiS, thiamine-biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.982 |
| Rru_A2814 | Rru_A3793 | Rru_A2814 | Rru_A3793 | Molybdopterin synthase subunit MoaD. | Molybdopterin biosynthesis protein. | 0.989 |
| Rru_A2814 | thiG | Rru_A2814 | Rru_A2432 | Molybdopterin synthase subunit MoaD. | ThiS, thiamine-biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.921 |
| Rru_A3633 | Rru_A1102 | Rru_A3633 | Rru_A1102 | Thiamine monophosphate synthase. | Phosphomethylpyrimidine kinase. | 0.801 |
| Rru_A3633 | Rru_A2025 | Rru_A3633 | Rru_A2025 | Thiamine monophosphate synthase. | Transcriptional activator, TenA family. | 0.523 |
| Rru_A3633 | Rru_A3793 | Rru_A3633 | Rru_A3793 | Thiamine monophosphate synthase. | Molybdopterin biosynthesis protein. | 0.693 |
| Rru_A3633 | thiC | Rru_A3633 | Rru_A2008 | Thiamine monophosphate synthase. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.852 |
| Rru_A3633 | thiG | Rru_A3633 | Rru_A2432 | Thiamine monophosphate synthase. | ThiS, thiamine-biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.995 |
page 1 of 3