Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A0124 | Rru_A0125 | Putative diguanylate phosphodiesterase (EAL domain). | Diguanylate phosphodiesterase (EAL domain). | 0.808 |
Rru_A0124 | Rru_A2361 | Putative diguanylate phosphodiesterase (EAL domain). | Multi-sensor hybrid histidine kinase. | 0.784 |
Rru_A0124 | Rru_A2406 | Putative diguanylate phosphodiesterase (EAL domain). | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.513 |
Rru_A0124 | Rru_A2451 | Putative diguanylate phosphodiesterase (EAL domain). | Putative diguanylate cyclase (GGDEF domain). | 0.706 |
Rru_A0125 | Rru_A0124 | Diguanylate phosphodiesterase (EAL domain). | Putative diguanylate phosphodiesterase (EAL domain). | 0.808 |
Rru_A0125 | Rru_A2361 | Diguanylate phosphodiesterase (EAL domain). | Multi-sensor hybrid histidine kinase. | 0.798 |
Rru_A0125 | Rru_A2406 | Diguanylate phosphodiesterase (EAL domain). | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.520 |
Rru_A0125 | Rru_A2451 | Diguanylate phosphodiesterase (EAL domain). | Putative diguanylate cyclase (GGDEF domain). | 0.708 |
Rru_A0659 | Rru_A1659 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate phosphodiesterase (EAL domain). | 0.455 |
Rru_A0659 | Rru_A2361 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Multi-sensor hybrid histidine kinase. | 0.970 |
Rru_A0659 | Rru_A2406 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.920 |
Rru_A0659 | Rru_A2451 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain). | 0.857 |
Rru_A0659 | Rru_A2934 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate phosphodiesterase (EAL domain). | 0.404 |
Rru_A0659 | Rru_A3180 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Metal dependent phosphohydrolase. | 0.912 |
Rru_A0659 | Rru_A3345 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). | 0.690 |
Rru_A0659 | Rru_A3494 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation. | 0.461 |
Rru_A1659 | Rru_A0659 | Putative diguanylate phosphodiesterase (EAL domain). | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.455 |
Rru_A1659 | Rru_A2361 | Putative diguanylate phosphodiesterase (EAL domain). | Multi-sensor hybrid histidine kinase. | 0.798 |
Rru_A1659 | Rru_A2406 | Putative diguanylate phosphodiesterase (EAL domain). | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.665 |
Rru_A1659 | Rru_A2451 | Putative diguanylate phosphodiesterase (EAL domain). | Putative diguanylate cyclase (GGDEF domain). | 0.978 |
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