STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2802Cytochrome c, class I. (82 aa)    
Predicted Functional Partners:
Rru_A2309
NADH peroxidase.
   
 
 0.874
Rru_A3331
Cytochrome C oxidase, mono-heme subunit/FixO.
  
 
 0.845
Rru_A3332
Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.817
Rru_A2645
Conserved hypothetical protein.
  
 
 0.742
Rru_A0310
Ferredoxin hydrogenase.
    
   0.702
Rru_A2801
Thiol-disulfide interchange protein.
  
    0.504
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.