STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A2875Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
Rru_A0686
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.679
Rru_A0334
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.619
Rru_A2876
Aldo/keto reductase.
 
     0.619
Rru_A0785
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.592
Rru_A2004
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.582
Rru_A2782
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
0.534
Rru_A0019
Glutamate synthase (NADPH) large subunit.
  
  
 0.489
rpoH-2
Sigma 32 (RpoH); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
   
 0.460
Rru_A3537
Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
   
  
 0.417
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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