Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A0873 | Rru_A2993 | Rru_A0873 | Rru_A2993 | Hypothetical protein. | Hypothetical protein. | 0.407 |
Rru_A2993 | Rru_A0873 | Rru_A2993 | Rru_A0873 | Hypothetical protein. | Hypothetical protein. | 0.407 |
Rru_A2993 | Rru_A2994 | Rru_A2993 | Rru_A2994 | Hypothetical protein. | Hypothetical protein. | 0.805 |
Rru_A2993 | Rru_A2995 | Rru_A2993 | Rru_A2995 | Hypothetical protein. | Hypothetical protein. | 0.796 |
Rru_A2993 | Rru_A3628 | Rru_A2993 | Rru_A3628 | Hypothetical protein. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.744 |
Rru_A2993 | cbiD | Rru_A2993 | Rru_A2996 | Hypothetical protein. | Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | 0.497 |
Rru_A2993 | ftsZ | Rru_A2993 | Rru_A0944 | Hypothetical protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.411 |
Rru_A2993 | ligA | Rru_A2993 | Rru_A0939 | Hypothetical protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.406 |
Rru_A2993 | nifJ | Rru_A2993 | Rru_A2398 | Hypothetical protein. | Pyruvate-ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. | 0.458 |
Rru_A2993 | topA | Rru_A2993 | Rru_A3202 | Hypothetical protein. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.407 |
Rru_A2994 | Rru_A2993 | Rru_A2994 | Rru_A2993 | Hypothetical protein. | Hypothetical protein. | 0.805 |
Rru_A2994 | Rru_A2995 | Rru_A2994 | Rru_A2995 | Hypothetical protein. | Hypothetical protein. | 0.795 |
Rru_A2994 | cbiD | Rru_A2994 | Rru_A2996 | Hypothetical protein. | Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | 0.497 |
Rru_A2995 | Rru_A2993 | Rru_A2995 | Rru_A2993 | Hypothetical protein. | Hypothetical protein. | 0.796 |
Rru_A2995 | Rru_A2994 | Rru_A2995 | Rru_A2994 | Hypothetical protein. | Hypothetical protein. | 0.795 |
Rru_A2995 | cbiD | Rru_A2995 | Rru_A2996 | Hypothetical protein. | Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | 0.497 |
Rru_A3628 | Rru_A2993 | Rru_A3628 | Rru_A2993 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Hypothetical protein. | 0.744 |
Rru_A3628 | ftsZ | Rru_A3628 | Rru_A0944 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.615 |
Rru_A3628 | topA | Rru_A3628 | Rru_A3202 | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.466 |
cbiD | Rru_A2993 | Rru_A2996 | Rru_A2993 | Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. | Hypothetical protein. | 0.497 |
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