Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3003Transcriptional regulator, GntR family. (216 aa)    
Predicted Functional Partners:
Rru_A2063
Transcriptional regulator, GntR family.
  
     0.761
Rru_A1414
Transcriptional regulator, GntR family.
 
  
 0.595
Rru_A1255
Transcriptional regulator, GntR family.
  
     0.546
IlvH
Acetolactate synthase, small subunit.
  
    0.534
Rru_A3002
Nicotinamidase.
       0.499
Rru_A1344
Transcriptional regulator, IclR family.
  
  
 0.448
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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