STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3052Conserved hypothetical protein. (203 aa)    
Predicted Functional Partners:
Rru_A2968
Hypothetical protein.
  
     0.772
Rru_A0472
Hypothetical protein.
  
     0.748
Rru_A2839
Hypothetical protein.
  
     0.739
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
 
     0.724
Rru_A0139
Transcriptional regulator, MarR family.
  
     0.691
Rru_A1107
Hypothetical protein.
  
     0.690
Rru_A0531
Hypothetical protein.
  
     0.684
Rru_A3274
Hypothetical protein.
  
     0.684
Rru_A3567
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.678
Rru_A0013
Conserved hypothetical protein.
  
     0.674
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.