STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3063Crotonyl-CoA reductase. (427 aa)    
Predicted Functional Partners:
Rru_A3062
methylmalonyl-CoA mutase.
   
 0.964
Rru_A1572
methylmalonyl-CoA epimerase.
  
 0.960
Rru_A3064
Isovaleryl-CoA dehydrogenase.
 
 
 0.960
phaJ
MaoC-like dehydratase; Catalyzes the hydration of trans-2-enoyl-CoAs with a chain- length of 4-6 carbon atoms, forming the corresponding (3R)-3- hydroxyacyl-CoAs, which can then be utilized for the production of polyhydroxyalkanoates (PHA) polymers. Cannot use trans-2,3-octenoyl-CoA as substrate.
 
 0.941
Rru_A1201
MaoC-like dehydratase.
 
 
 0.882
Rru_A3801
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.835
Rru_A0217
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.731
Rru_A1046
AMP-dependent synthetase and ligase.
 
 
  
 0.727
Rru_A2156
Short chain enoyl-CoA hydratase.
  
 
 0.613
Rru_A2240
Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.613
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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