STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3090Glycosyl transferase, family 2. (310 aa)    
Predicted Functional Partners:
Rru_A3091
Glycosyl transferase, group 1.
    0.855
Rru_A3094
O-antigen polymerase.
 
  
 0.816
Rru_A3093
Membrane protein involved in the export of O-antigen and teichoic acid-like.
  
  
 0.765
Rru_A3092
Parallel beta-helix repeat.
       0.746
Rru_A3102
Sugar transferase.
 
  
 0.591
Rru_A2348
Glycosyl transferase.
 
 
 0.543
Rru_A1486
UDP-glucose 4-epimerase.
 
 
 0.532
Rru_A3108
NAD-dependent epimerase/dehydratase.
 
 
 0.526
Rru_A1482
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.503
Rru_A3721
Sugar transferase.
 
  
 0.501
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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