STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3093Membrane protein involved in the export of O-antigen and teichoic acid-like. (507 aa)    
Predicted Functional Partners:
Rru_A3094
O-antigen polymerase.
  
  
 0.863
Rru_A3091
Glycosyl transferase, group 1.
  
  
 0.812
Rru_A2116
UDP-glucose 6-dehydrogenase.
  
  
 0.775
Rru_A3090
Glycosyl transferase, family 2.
  
  
 0.765
Rru_A3092
Parallel beta-helix repeat.
       0.762
Rru_A2348
Glycosyl transferase.
  
  
 0.736
Rru_A1490
Protein-tyrosine kinase.
 
  
 0.616
Rru_A1493
UDP-N-Acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.561
Rru_A2740
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.561
Rru_A3715
Lipopolysaccharide biosynthesis.
  
  
 0.517
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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