STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3174Major facilitator superfamily MFS_1. (412 aa)    
Predicted Functional Partners:
Rru_A3173
Transcriptional regulator, TetR family.
 
     0.893
Rru_A2639
Hypothetical protein.
  
     0.582
Rru_A2789
Major facilitator superfamily protein MFS_1.
  
     0.540
Rru_A3172
Lysine exporter protein (LYSE/YGGA).
  
    0.525
Rru_A0460
NADP oxidoreductase, coenzyme F420-dependent.
 
     0.484
Rru_A2597
Iron permease FTR1.
  
     0.456
Rru_A2600
Protein of unknown function DUF451.
  
     0.451
Rru_A2598
Conserved hypothetical protein.
  
     0.447
Rru_A2599
Tat-translocated enzyme; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
     0.420
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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