STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3398Transcriptional regulator, XRE family. (180 aa)    
Predicted Functional Partners:
Rru_A1055
Protein of unknown function DUF1013.
  
     0.689
HolA
DNA polymerase III, delta subunit.
  
     0.677
recO
Recombination protein O, RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.659
Rru_A2226
Periplasmic Sensor Signal Transduction Histidine Kinase.
  
     0.651
Rru_A3566
HemY-like.
  
     0.632
Rru_A3075
Permease YjgP/YjgQ.
  
     0.616
Rru_A3269
Conserved hypothetical protein.
  
     0.606
Rru_A2037
Hypothetical protein.
  
     0.588
Rru_A0372
Conserved hypothetical protein.
  
     0.572
Rru_A0371
Double-transmembrane region-like.
  
     0.565
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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