STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3405Formaldehyde dehydrogenase (glutathione); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (372 aa)    
Predicted Functional Partners:
Rru_A3406
Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
Rru_A0930
Iron-containing alcohol dehydrogenase.
   
 0.980
Rru_A1503
Zinc-containing alcohol dehydrogenase superfamily.
  
 
0.976
Rru_A0285
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.924
Rru_A0931
Aldehyde dehydrogenase (NAD+).
 
 0.924
Rru_A0297
Putative esterase.
  
 
 0.885
Rru_A0904
Iron-containing alcohol dehydrogenase.
   
 
 0.816
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
 0.754
tadA
tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.635
Rru_A2242
Glutathione-dependent formaldehyde-activating, GFA.
    
 0.633
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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