STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3412Amidohydrolase. (409 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
  
  
 0.866
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.866
Rru_A3418
Transcriptional regulator, TetR family.
 
     0.698
Rru_A3414
ABC transporter component.
 
     0.697
Rru_A3417
Extracellular ligand-binding receptor.
 
     0.672
Rru_A3413
ABC transporter component.
       0.650
Rru_A3415
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.650
Rru_A1300
N-formylglutamate deformylase.
  
  
 0.607
Rru_A2547
N-formylglutamate amidohydrolase.
  
  
 0.607
Rru_A3416
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.603
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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