Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A0528 | Rru_A2015 | Rru_A0528 | Rru_A2015 | Heat shock protein DnaJ-like. | Chaperone DnaJ. | 0.566 |
Rru_A0528 | Rru_A2109 | Rru_A0528 | Rru_A2109 | Heat shock protein DnaJ-like. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.713 |
Rru_A0528 | clpB | Rru_A0528 | Rru_A0753 | Heat shock protein DnaJ-like. | Chaperone clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.713 |
Rru_A0528 | dnaK | Rru_A0528 | Rru_A3555 | Heat shock protein DnaJ-like. | Heat shock protein Hsp70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.990 |
Rru_A0528 | groL1 | Rru_A0528 | Rru_A0162 | Heat shock protein DnaJ-like. | Chaperonin Cpn60/TCP-1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.798 |
Rru_A0528 | groL2 | Rru_A0528 | Rru_A0587 | Heat shock protein DnaJ-like. | Chaperonin Cpn60/TCP-1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.799 |
Rru_A0528 | grpE | Rru_A0528 | Rru_A3643 | Heat shock protein DnaJ-like. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.891 |
Rru_A0528 | htpG | Rru_A0528 | Rru_A0072 | Heat shock protein DnaJ-like. | Chaperone protein Hsp90; Molecular chaperone. Has ATPase activity. | 0.937 |
Rru_A2015 | Rru_A0528 | Rru_A2015 | Rru_A0528 | Chaperone DnaJ. | Heat shock protein DnaJ-like. | 0.566 |
Rru_A2015 | Rru_A2109 | Rru_A2015 | Rru_A2109 | Chaperone DnaJ. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.719 |
Rru_A2015 | clpB | Rru_A2015 | Rru_A0753 | Chaperone DnaJ. | Chaperone clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.719 |
Rru_A2015 | dnaK | Rru_A2015 | Rru_A3555 | Chaperone DnaJ. | Heat shock protein Hsp70; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.979 |
Rru_A2015 | groL1 | Rru_A2015 | Rru_A0162 | Chaperone DnaJ. | Chaperonin Cpn60/TCP-1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.743 |
Rru_A2015 | groL2 | Rru_A2015 | Rru_A0587 | Chaperone DnaJ. | Chaperonin Cpn60/TCP-1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.745 |
Rru_A2015 | grpE | Rru_A2015 | Rru_A3643 | Chaperone DnaJ. | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.863 |
Rru_A2015 | htpG | Rru_A2015 | Rru_A0072 | Chaperone DnaJ. | Chaperone protein Hsp90; Molecular chaperone. Has ATPase activity. | 0.881 |
Rru_A2109 | Rru_A0528 | Rru_A2109 | Rru_A0528 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Heat shock protein DnaJ-like. | 0.713 |
Rru_A2109 | Rru_A2015 | Rru_A2109 | Rru_A2015 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Chaperone DnaJ. | 0.719 |
Rru_A2109 | Rru_A2626 | Rru_A2109 | Rru_A2626 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Chaperone DnaJ. | 0.719 |
Rru_A2109 | dnaJ | Rru_A2109 | Rru_A3554 | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | Heat shock protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.722 |
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