STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3570Protein of unknown function DUF29. (147 aa)    
Predicted Functional Partners:
Rru_A2864
Predicted signal transduction protein containing EFhand domain.
    
 0.960
Rru_A2348
Glycosyl transferase.
   
 
 0.861
Rru_A0837
Leucine-rich repeat.
   
 0.811
Rru_A0868
Peptidase C14, caspase catalytic subunit p20.
  
 0.767
Rru_A1285
WD-40 repeat.
  
 0.743
apaG
Protein of unknown function DUF525.
  
  
 0.737
Rru_A0208
SNF2 helicase-related protein.
    
 
 0.720
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
   0.654
Rru_A0818
Hypothetical protein.
  
     0.652
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.584
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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