STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3601Transcriptional regulator, XRE family. (124 aa)    
Predicted Functional Partners:
Rru_A3602
Smr protein/MutS2-like.
       0.841
Rru_A3603
Protein of unknown function DUF162.
       0.808
Rru_A3606
Protein of unknown function DUF224, cysteine-rich region.
   
   0.619
Rru_A3608
Conserved hypothetical protein.
 
     0.607
Rru_A1844
RDD.
  
     0.599
Rru_A3605
Iron-sulfur cluster binding protein.
       0.593
Rru_A0139
Transcriptional regulator, MarR family.
  
 
   0.580
Rru_A3604
Hypothetical protein.
       0.558
Rru_A3636
Hypothetical protein.
  
     0.536
Rru_A3607
Murein degrading transglycosylase protein.
       0.528
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.