Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A3768 | Rru_A3769 | Rru_A3768 | Rru_A3769 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | Lyso-ornithine lipid acyltransferase. | 0.991 |
Rru_A3768 | Rru_A3771 | Rru_A3768 | Rru_A3771 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | PhoH-like protein. | 0.706 |
Rru_A3768 | Rru_A3773 | Rru_A3768 | Rru_A3773 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | CBS domain protein. | 0.703 |
Rru_A3768 | Rru_A3775 | Rru_A3768 | Rru_A3775 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | Transcriptional regulator, XRE family. | 0.598 |
Rru_A3768 | fur | Rru_A3768 | Rru_A3767 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | Ferric uptake regulator (FUR) family; Belongs to the Fur family. | 0.712 |
Rru_A3768 | lnt | Rru_A3768 | Rru_A3774 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.707 |
Rru_A3768 | miaB | Rru_A3768 | Rru_A3770 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.716 |
Rru_A3768 | ybeY | Rru_A3768 | Rru_A3772 | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.705 |
Rru_A3769 | Rru_A3768 | Rru_A3769 | Rru_A3768 | Lyso-ornithine lipid acyltransferase. | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | 0.991 |
Rru_A3769 | Rru_A3771 | Rru_A3769 | Rru_A3771 | Lyso-ornithine lipid acyltransferase. | PhoH-like protein. | 0.706 |
Rru_A3769 | Rru_A3773 | Rru_A3769 | Rru_A3773 | Lyso-ornithine lipid acyltransferase. | CBS domain protein. | 0.703 |
Rru_A3769 | fur | Rru_A3769 | Rru_A3767 | Lyso-ornithine lipid acyltransferase. | Ferric uptake regulator (FUR) family; Belongs to the Fur family. | 0.710 |
Rru_A3769 | lnt | Rru_A3769 | Rru_A3774 | Lyso-ornithine lipid acyltransferase. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.725 |
Rru_A3769 | miaB | Rru_A3769 | Rru_A3770 | Lyso-ornithine lipid acyltransferase. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.718 |
Rru_A3769 | trmB | Rru_A3769 | Rru_A3777 | Lyso-ornithine lipid acyltransferase. | Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.442 |
Rru_A3769 | ybeY | Rru_A3769 | Rru_A3772 | Lyso-ornithine lipid acyltransferase. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.722 |
Rru_A3771 | Rru_A3768 | Rru_A3771 | Rru_A3768 | PhoH-like protein. | Ornithine-acyl[acyl carrier protein] N-acyltransferase. | 0.706 |
Rru_A3771 | Rru_A3769 | Rru_A3771 | Rru_A3769 | PhoH-like protein. | Lyso-ornithine lipid acyltransferase. | 0.706 |
Rru_A3771 | Rru_A3773 | Rru_A3771 | Rru_A3773 | PhoH-like protein. | CBS domain protein. | 0.871 |
Rru_A3771 | Rru_A3775 | Rru_A3771 | Rru_A3775 | PhoH-like protein. | Transcriptional regulator, XRE family. | 0.506 |
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